miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190473283|gb|FG870240.1|FG870240 AATCTGCACAGTGGTCATACAGTGTTTTTGTTCTCTACTCCCCCTGCAGTGCACAATGCACCTCAGAAACACTTGCTTGG
TTTTGAGAAAGTTCAATTGATGGGAAAATCAGAAACACTGGTTAGGTTCAAAGTAGATGTTTGTAAAGATTTGAGTATAG
TTGATGAACTTGGCAACAGAAAAGTTGCCTTAGGACAGCATCTGCTTCATGTGGGGAATTTGAAGCATCCTTTGAGTGTG
ATGATTTGAAATAAACCTTCAAATCTTCAGCACTCGGGGCTTTCTTTTGTTCCTTTCGGGAAAAATTTAAAGGGGACCAG
AAATAAGTTTGAGGTAATTGTAGCAAATTCTCTTATTTCTTCTTGTTCAAATACAAAAATTTGAAATGCTTTCAGAAAAA
AAAAAAAAAAAA




Most similar to sp|A5JTQ3|XYL2_MEDSV

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2
           OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1
          Length = 774

 Score =  139 bits (349), Expect = 7e-33
 Identities = 67/81 (82%), Positives = 72/81 (88%)
 Frame = +1

Query: 4   LHSGHTVFLFSTPPAVHNAPQKHLLGFEKVQLMGKSETLVRFKVDVCKDLSIVDELGNRK 183
           + S  TVFLFSTPPAVHNAPQKHLL FEKV L GKSE LV FKVDVCKDL +VDELGNRK
Sbjct: 694 MSSSQTVFLFSTPPAVHNAPQKHLLAFEKVLLTGKSEALVSFKVDVCKDLGLVDELGNRK 753

Query: 184 VALGQHLLHVGNLKHPLSVMI 246
           VALG+H+LHVG+LKHPLSVMI
Sbjct: 754 VALGKHMLHVGDLKHPLSVMI 774